Linear Superbubble Detector¶
Introduction¶
This project gives the reference implementation of the Linear Superbubble Dector (LSD).
Features¶
- Detect superbubbles in linear time
- Uses NetworkX as graph library
- Can load plenty file formats (everything that NetworkX can load )
- Have different ways to report the superbubbles
- Simple and clean code
- Simple to understand and reimplement
Documentation¶
The documentation can be found at: https://fabianexe.github.io/Superbubble
Installation¶
The simples way to install is using pip:
pip install LSD-Bubble
You can also download the source from https://github.com/Fabianexe/Superbubble and run the make script to install the package. These needs that setuptools are installed.
Usage¶
The programms needs only a path to a graph file to work:
lsd path
If as input format not edgelist is used give the format with the -f parameter
lsd path -f gml
If you want a different reporting format use -r
lsd path -r count
If you want not to detect superbubbles but week superbubbles use –week:
lsd path –week